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Update Dockerfile
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niemasd authored Apr 15, 2024
1 parent 32e1ee3 commit ea1d28c
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ RUN apt-get update && apt-get -y upgrade && \
rm -rf htslib-* && \

# Install Bowtie2
wget -qO- "https://github.com/BenLangmead/bowtie2/archive/refs/tags/v2.5.2.tar.gz" | tar -zx && \
wget -qO- "https://github.com/BenLangmead/bowtie2/archive/refs/tags/v2.5.3.tar.gz" | tar -zx && \
cd bowtie2-* && \
make && \
make install && \
Expand Down Expand Up @@ -88,7 +88,7 @@ RUN apt-get update && apt-get -y upgrade && \
rm -rf seq-align && \

# Install STAR
wget -qO- "https://github.com/alexdobin/STAR/archive/refs/tags/2.7.11a.tar.gz" | tar -zx && \
wget -qO- "https://github.com/alexdobin/STAR/archive/refs/tags/2.7.11b.tar.gz" | tar -zx && \
mv STAR-*/bin/Linux_*_static/* /usr/local/bin/ && \
rm -rf STAR-* && \

Expand All @@ -102,7 +102,7 @@ RUN apt-get update && apt-get -y upgrade && \
rm -rf master.zip unimap-master && \

# Install wfmash
wget -qO- "https://github.com/waveygang/wfmash/releases/download/v0.10.5/wfmash-v0.10.5.tar.gz" | tar -zx && \
wget -qO- "https://github.com/waveygang/wfmash/releases/download/v0.13.0/wfmash-v0.13.0.tar.gz" | tar -zx && \
cd wfmash-* && \
cmake -H. -Bbuild -DCMAKE_C_COMPILER="$(which gcc-10)" -DCMAKE_CXX_COMPILER="$(which g++-10)" && \
cmake --build build -- && \
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