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    43 repositories

    • DataDiVR_WebApp

      Public
      JavaScript
      •
      MIT License
      •4•9•18•0•Updated Oct 20, 2024Oct 20, 2024

    • sctools

      Public
      Collection of helper functions to make large scale single cell analysis more bearable
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • Neuwirth_Malzl_et_al_2024

      Public
      Code repository for all analyses shown in Neuwirth and Malzl et al. 2024
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • Exposome

      Public template
      This repository will contain the analyses for the human exposure network paper
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • mutsigintsKit

      Public
      Functions for the mutsigints project.
      R
      •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

    • mutsigints

      Public
      Interactions of mutational signatures and cancer states
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • SA_bone_marrow

      Public
      scRNA-seq analysis of the Radhouani et al.
      Jupyter Notebook
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • Grundtner_et_al_2024

      Public
      All the code used for data analysis with MEFISTO
      Jupyter Notebook
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • apobex

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • CartoGRAPHs

      Public
      HTML
      •
      MIT License
      •3•22•1•0•Updated May 16, 2024May 16, 2024

    • catwork

      Public
      Enables participants of an event to scan each others QR codes and creates a social network in real time
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • CytoDiVR

      Public
      Cytoscape Application to provide feature for the use of the DataDiVR
      Java
      •
      MIT License
      •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • ExampleExtension

      Public template
      Example Repository of an VRNetzer backend extension
      HTML
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • hfd-mutagenesis

      Public
      Code for Analysis and Figures of Manuscript "Mutational Landscape of Intestinal Stem Cells After Long-term in Vivo Exposure to High Fat Diet"
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • network_course

      Public
      Jupyter Notebook
      •3•2•0•0•Updated Dec 6, 2023Dec 6, 2023

    • radipop_scripts

      Public
      Scripts to train and validate random forest model for HVPG prediction
      Jupyter Notebook
      •0•1•0•0•Updated Nov 20, 2023Nov 20, 2023

    • novarinocollab

      Public
      A repository containing the code for the collaboration with the Novarino lab
      Jupyter Notebook
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • cartoGRAPHs_app

      Public
      A webbased visualization framework for networks.
      Python
      •
      MIT License
      •3•4•0•0•Updated Oct 22, 2023Oct 22, 2023

    • VRNetzer

      Public
      A Virtual Reality platform for interactive, immersive network exploration.
      virtual-realitynetwork-analysisnetwork-visualization
      MIT License
      •3•34•11•0•Updated Sep 18, 2023Sep 18, 2023

    • PPI_Spread_for_MutSig

      Public
      Spread mutations capture disturbed repair modules in the PPI
      Python
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • ISMB_ECCB_2023_Network_VR_Visualization

      Public
      Jupyter Notebook
      •1•2•0•0•Updated Jul 23, 2023Jul 23, 2023

    • BioProfiling.jl

      Public
      A flexible Julia toolkit for high-dimensional cellular profiles
      morphological-analysishigh-content-screeningjulia
      Julia
      •
      MIT License
      •1•13•18•0•Updated Jul 14, 2023Jul 14, 2023

    • ProteinStructureFetch

      Public
      Repository for the ProteinStructureFetch extensions. An extension for the VRNetzer ecosystem.
      Python
      •0•0•0•0•Updated Jul 4, 2023Jul 4, 2023

    • StringEx

      Public
      Contains the StringEx extension for the VRNetzer backend
      Python
      •0•1•0•0•Updated Jul 3, 2023Jul 3, 2023

    • Analytics_Module

      Public
      Flask-based server handling data requests from the UI Module (VRNetzer)
      Python
      •
      MIT License
      •4•2•8•3•Updated May 1, 2023May 1, 2023

    • STRING-VRNetzer

      Public archive
      Access protein-protein association networks from STRING DB in VRNetzer
      Java
      •
      MIT License
      •0•1•6•0•Updated Mar 27, 2023Mar 27, 2023

    • vrprot

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • Knaus_et_al_2022

      Public
      This repository contains information and code about the analysis of metabolomics, lipidomics and proteomics for Knaus et al. Large neutral amino acid levels tune perinatal neuronal excitability and survival
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 24, 2022Nov 24, 2022

    • AutoCore

      Public
      AutoCore code
      Jupyter Notebook
      •0•0•0•0•Updated Nov 7, 2022Nov 7, 2022

    • BioProfilingNotebooks

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 14, 2022Oct 14, 2022