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@microgenlab Microbial Genomics Laboratory - Institut Pasteur Montevideo

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    7 repositories

    • porefile

      Public
      A Nextflow full-length 16S profiling pipeline for ONT reads
      dockernanoporenextflowprofiling16spipelinesingularity
      Nextflow
      •
      GNU General Public License v3.0
      •5•24•1•0•Updated Nov 16, 2023Nov 16, 2023

    • simulations_16S

      Public
      HTML
      •0•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • spike

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023

    • spikeseq

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2022Nov 3, 2022

    • wf-artic

      Public
      ARTIC SARS-CoV-2 workflow and reporting
      Python
      •
      Mozilla Public License 2.0
      •35•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • simurg

      Public
      Simulate pangenomes according to the IMG + Neutral models
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 30, 2019Jul 30, 2019

    • MLSTar

      Public
      An easy way of MLSTyping your genomes in R.
      R
      •
      MIT License
      •10•0•0•0•Updated Jun 11, 2019Jun 11, 2019