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Fmri to dataset #127

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9593e8c
class for parsing derivatives subdirectory in BIDS format
adkipnis Sep 17, 2020
e76ae33
added / refined subsetting methods; added function to flatten lists; …
adkipnis Sep 17, 2020
de9fd8e
added docstrings and function to load SPM beta coefficients optionall…
adkipnis Sep 17, 2020
4681970
added option to not provide a dictionary for load_SPM_beta_images()
adkipnis Sep 17, 2020
2787d8e
np.stack for list of 3d images to 4d array
adkipnis Sep 18, 2020
ba435b9
renamed pooling.py to fmri.py
adkipnis Sep 18, 2020
f2585cb
inherited class for parsed data of only one subject; methods for load…
adkipnis Sep 18, 2020
f3f49ac
started coding unit tests
adkipnis Sep 18, 2020
d0f8f63
fixed __init__ bugs, first parsing unit tests
adkipnis Sep 18, 2020
3116690
example dataset
adkipnis Sep 18, 2020
f6bb711
minor bug fixes and full unit tests for all things pooling
adkipnis Sep 18, 2020
003c342
CodeFactor fixes
adkipnis Sep 18, 2020
56b495c
CodeFactor fixes
adkipnis Sep 18, 2020
38932dc
starterd coding class to read in 4d nifti files
adkipnis Sep 18, 2020
db58eb8
added nibabel and pandas to requirements.txt
adkipnis Sep 19, 2020
2b23211
Merge branch 'master' into fmri-to-dataset
HeikoSchuett Sep 21, 2020
8ef3a98
Merge branch 'master' into fmri-to-dataset
HeikoSchuett Oct 20, 2020
497a51a
merge main
HeikoSchuett Jun 23, 2021
626eb00
updated fmri-tests to folder structure
HeikoSchuett Jun 23, 2021
95a0146
fix example data for test_fmri.py
adkipnis Jun 27, 2021
5ceceff
Merge branch 'main' into fmri-to-dataset
HeikoSchuett Dec 18, 2021
ae81191
stylefix fmri
HeikoSchuett Dec 18, 2021
6207a97
moved fmri to io
HeikoSchuett Dec 18, 2021
7969629
added init to nifti_filenames
HeikoSchuett Dec 18, 2021
ea52543
style fmri_test
HeikoSchuett Dec 18, 2021
4c7c58c
Merge branch 'main' into fmri-to-dataset
JasperVanDenBosch Sep 13, 2023
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2 changes: 2 additions & 0 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -7,3 +7,5 @@ tqdm
h5py
matplotlib
joblib
nibabel
pandas
1 change: 0 additions & 1 deletion rsatoolbox/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@
# -*- coding: utf-8 -*-
""" Top level package: Only imports and organisation
"""

from . import data
from . import inference
from . import model
Expand Down
2 changes: 2 additions & 0 deletions rsatoolbox/data/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,3 +7,5 @@
from .computations import average_dataset_by
from .noise import cov_from_residuals
from .noise import prec_from_residuals
from .fmri import BidsDerivatives
from .fmri import BidsDerivativesSubject
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