ShahCompBio
Computational biology tools from the Shah Lab
Popular repositories Loading
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hmmcopy_utils
hmmcopy_utils PublicTools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
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single_cell_pipeline
single_cell_pipeline PublicSingle Cell Analysis Automated Workflow
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spectrum-tme
spectrum-tme PublicSupporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
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MultiModalMuSig.jl
MultiModalMuSig.jl PublicA Julia package for extracting mutation signatures using topic models
Repositories
Showing 10 of 132 repositories
- wgs_analysis Public
shahcompbio/wgs_analysis’s past year of commit activity - alhenaloader Public
shahcompbio/alhenaloader’s past year of commit activity - doubleTime Public
doubleTime is a method to estimate the timing of whole-genome doubling event(s) on a clone tree using SNVs
shahcompbio/doubleTime’s past year of commit activity - scdna_replication_tools Public
Tools for assigning S-phase cells to clones and inferring single-cell replication timing (scRT) profiles
shahcompbio/scdna_replication_tools’s past year of commit activity - bulk-illumina-rnaseq Public Forked from nf-core/rnaseq
RNA seq analysis pipeline for alignment and quantification of bulk illumina data
shahcompbio/bulk-illumina-rnaseq’s past year of commit activity