Alhena loader for IGO.
This extends the existing alhenaloader module by providing methods that'll pull data as needed from Isabl to load.
git clone https://github.com/shahcompbio/alhena_igo.git
conda create -n alhena python=3.9
source alhena
cd alhena_igo
make build
To load a single analysis:
alhena_igo --host <host> load --id <aliquot ID> --project SPECTRUM --project DLP
To load an entire analysis over from Isabl
alhena_igo --host <host> load-project --alhena <project name in Alhena> --isabl <Project ID in Isabl>
Note that the above requires the project name to already exist in Alhena. If this is not the case, then run:
alhenaloader --host <host> add-project <name of project in Alhena>
To remove an analysis
alhena_igo --host <host> clean --id <aliquot ID>
or
alhena_igo --host <host> clean --analysis <Alhena ID>
- Samantha Leung - Initial work - github
See also the list of contributors who participated in this project.
Copyright (c) redpanda_cat
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