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[python] Geometry DataFrame #3297

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[python] Geometry DataFrame #3297

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fa66ba2
Geometry dataframe implementation, use spatial axes when available wh…
XanthosXanthopoulos Oct 21, 2024
ead7104
Address PR review comments
XanthosXanthopoulos Oct 24, 2024
b744e20
Add option for casting geometry data to WKB
XanthosXanthopoulos Oct 23, 2024
928ccf2
Remove constant prefix name from SOMAGeometryDataFrame
XanthosXanthopoulos Oct 24, 2024
ca6eb88
Change binary type buffer from uint8_t to std::byte (#3233)
XanthosXanthopoulos Oct 25, 2024
40a95f2
Address PR comments
XanthosXanthopoulos Oct 29, 2024
5a0f5f5
Hide tiledb internal spatial columns and replace them with soma_geometry
XanthosXanthopoulos Oct 31, 2024
fbac212
Change iteration order or attributes
XanthosXanthopoulos Oct 31, 2024
eb47db2
Swap shared_ptr with const reference, hide internal columns when open…
XanthosXanthopoulos Nov 1, 2024
0ccae7e
Change the way to obtain attributes and dimensions
XanthosXanthopoulos Nov 1, 2024
d6276c5
Move internal dimension filtering to ManagedQuery
XanthosXanthopoulos Nov 1, 2024
05314fb
Geometry dataframe implementation allowing read and spatial region re…
XanthosXanthopoulos Nov 1, 2024
6de3420
Add write implementation for Geometry DataFrame, filter internal tile…
XanthosXanthopoulos Nov 6, 2024
c59ea75
Update apis/python/src/tiledbsoma/_spatial_util.py
XanthosXanthopoulos Nov 6, 2024
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1 change: 1 addition & 0 deletions apis/python/setup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -308,6 +308,7 @@ def run(self):
"src/tiledbsoma/soma_array.cc",
"src/tiledbsoma/soma_object.cc",
"src/tiledbsoma/soma_dataframe.cc",
"src/tiledbsoma/soma_geometry_dataframe.cc",
"src/tiledbsoma/soma_point_cloud_dataframe.cc",
"src/tiledbsoma/soma_dense_ndarray.cc",
"src/tiledbsoma/soma_sparse_ndarray.cc",
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2 changes: 2 additions & 0 deletions apis/python/src/tiledbsoma/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -177,6 +177,7 @@
from ._indexer import IntIndexer, tiledbsoma_build_index
from ._measurement import Measurement
from ._multiscale_image import ImageProperties, MultiscaleImage
from ._geometry_dataframe import GeometryDataFrame
from ._point_cloud_dataframe import PointCloudDataFrame
from ._scene import Scene
from ._sparse_nd_array import SparseNDArray, SparseNDArrayRead
Expand Down Expand Up @@ -206,6 +207,7 @@
"DoesNotExistError",
"Experiment",
"ExperimentAxisQuery",
"GeometryDataFrame",
"get_implementation_version",
"get_implementation",
"get_SOMA_version",
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