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47 Open 39 Closed
47 Open 39 Closed
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Issues list

Large number of unassigned
#110 opened Nov 14, 2024 by Run2309
Synthetic Bams -- High Disconcordance Rate
#109 opened Oct 10, 2024 by marcus-tutert
updated release for 0.5.8
#107 opened Aug 23, 2024 by chouellaine
1
Why those cells are unassigned?
#106 opened Jul 30, 2024 by tewengtong
3
VCFfiles: seperated or merged
#105 opened Jul 19, 2024 by hsymoon
2
ValueError: column index exceeds matrix dimensions
#104 opened Jul 8, 2024 by hsymoon
3
Error: require the same format for all variants.
#102 opened Jun 4, 2024 by hsymoon
1
Most cells are unassigned and a few of them do not match the filters
#99 opened Apr 16, 2024 by txemaheredia
7
A large number of cells are unassigned & very few n_vars
#96 opened Apr 3, 2024 by nansne
3
Demultiplexing multiomic sequencing data
#95 opened Apr 1, 2024 by DHelix
2
ELBO metric when running vireo from the command line?
#93 opened Mar 21, 2024 by jamesnemesh
Discriminative variants with GTbarcode
#92 opened Mar 4, 2024 by flde
4
Beneficial to pool .bam files from seperate 10x single-cell lanes instead of demultilplexing seperately?
#89 opened Nov 14, 2023 by koefoeden
7
Inferring consensus genotype for N=1
#87 opened Sep 7, 2023 by Ngort
Subsetting donor VCF file for Vireo strategy 2
#85 opened Jun 5, 2023 by lucygarner
3
ValueError: could not convert string to float: '.'
#84 opened May 11, 2023 by algarnham
1
Error when running vireo mode 2 with option -N 1
#83 opened Apr 11, 2023 by calebthomas259
1
How to export the cell barcodes for each clone identified
#80 opened Feb 22, 2023 by haigdjambazian
5
Unclear Usage for CITE-seq Data
#78 opened Feb 22, 2023 by DarioS
1
Use Manual Lacks Information About Output Files
#77 opened Feb 22, 2023 by DarioS
1
TypeError: cannot unpack non-iterable NoneType object
#76 opened Feb 19, 2023 by padro89
6
TypeError: '>=' not supported between instances of 'NoneType' and 'int'
#75 opened Jan 31, 2023 by alexisweber
1
10x Multiome RNA vs ATAC data from same cells confidently disagrees on donor identities
#70 opened Aug 26, 2022 by koefoeden
9
Assign donor ids to actual donor
#69 opened Aug 26, 2022 by Parul-Kudtarkar
2
vireo detects 0 variants
#67 opened Aug 11, 2022 by DanielMedinaCano
ProTip! Exclude everything labeled bug with -label:bug.