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3d-microscopy

Here are 5 public repositories matching this topic...

ekatrukha / BigTrace

FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

java imglib2 volume-rendering fiji-plugin 3d-volume utrecht-university bigdataviewer curve-tracing 3d-microscopy

Updated Oct 18, 2024
Java

b-heifets / UNRAVEL

UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images

registration segmentation lsfm 3d-microscopy 3d-image-analysis voxel-wise-stats region-wise-stats cluster-wise-stats cleared-mouse-brains

Updated Nov 15, 2024
Python

PTRRupprecht / Cell_Detection

Python code for merging and refinement of detected neurons in large 3D stacks

deep-learning convolutional-neural-networks cell-detection peak-detection light-sheet-microcopy mesospim 3d-microscopy

Updated Dec 9, 2023
Python

imrahilias / biophysics

All this is part of my Projektarbeit (student project) @ TU Wien 2021

super-resolution fluorescence-microscopy-imaging smlm single-molecule-imaging 3d-microscopy dual-channel-smlm

Updated Feb 7, 2023
Jupyter Notebook

ekatrukha / AveragingND

FIJI plugin for the averaging of ND (2/3/4D) images

java imglib2 microscopy fiji-plugin utrecht-university averaging 3d-microscopy

Updated Sep 12, 2024
Java

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