Lightweight and Fast; RNA-seq quantification at the event-level
-
Updated
Dec 12, 2023 - Julia
#
alternative-splicing
Here are 70 public repositories matching this topic...
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection
-
Updated
Jul 7, 2022 - Python
Discover differential transcript usage from polyA-captured single cell RNA-seq data
-
Updated
Jun 29, 2023 - R
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
rna-seq alternative-splicing single-cell isoform-quantification variantional-inference differential-splicing differential-momentum-gene
-
Updated
Jun 17, 2024 - Python
Interactive R package to quantify, analyse and visualise alternative splicing
tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2
-
Updated
Dec 9, 2024 - R
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
-
Updated
Jun 16, 2022 - Python
NGS Tutorial
-
Updated
Apr 22, 2017 - HTML
ISOform-guided prediction of epiTOPEs in cancer
-
Updated
Apr 10, 2023 - Python
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
-
Updated
Mar 5, 2018 - Jupyter Notebook
A network-based approach for exon set enrichment
rna-seq statistics alternative-splicing network-analysis transcriptomics protein-protein-interaction bioinformatics-tool
-
Updated
Apr 18, 2024 - Python
Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
-
Updated
Jan 8, 2018 - TypeScript
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
bioinformatics rna-seq database data-visualization webapp alternative-splicing bam arabidopsis efp rna-seq-mapping arabidopsis-thaliana
-
Updated
Oct 25, 2024 - HTML
Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
-
Updated
Jun 29, 2024 - Python
⚔️Find splicing-led, functional changes of the proteome.
-
Updated
Jun 18, 2019 - Python
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
-
Updated
Jun 14, 2024 - Python
Baltica: integrated differential junction usage
-
Updated
Mar 22, 2023 - R
Tutorials for using BRIE
alternative-splicing variational-inference single-cell-rna-seq rna-velocity differential-splicing differential-momentum-genes
-
Updated
May 29, 2022 - Jupyter Notebook
viterbi-algorithm computational-biology gene-expression smith-waterman alternative-splicing gradient-descent differential-expression gillespie genome-analysis gradient-descent-algorithm bowtie2 differential-analysis single-cell-genomics gillespie-algorithm single-cell-analysis gradient-descent-implementation genome-alignment viterbi-decoder smith-waterman-alignment differential-expression-analysis
-
Updated
Dec 21, 2019 - Jupyter Notebook
Improve this page
Add a description, image, and links to the alternative-splicing topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the alternative-splicing topic, visit your repo's landing page and select "manage topics."