This repo contains Bioinformatics lecture notes using Biopython.

Machine Learning on Protein Molecule Sequence

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …

Protein Synthesis Project Using Python, BioPython, and BioSQL

Optimization of operations from pairwise2 module in Biopython library

Explorando a biblioteca Biopython

Script for sorting FASTA sequences by clade in a given tree topology.

Coursework in bioinformatics class

This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Developed a predictive bioinformatics service which evaluates if the new DNA/RNA strain is virulent or not with testing accuracy 99%. Extra-Tree Classifier ensemble method is used to develop the model and UI is developed with streamlit.io. The service is dockerized and deployed on EC2 instance.

Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

Scripts to automate general time-consuming tasks

Explore the project, where the complete sequence alignment is visually presented. This concise visualization offers a clear understanding of the differences between the reference and delta variant sequences. Dive into this comparative study to gain insights into the genomic variations and evolutionary dynamics of these prominent strains.