Analysis at single-cell level with HCS microscopy and Cell Profiler
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Updated
Mar 28, 2018
Analysis at single-cell level with HCS microscopy and Cell Profiler
Metadata files for idr0056 submission
Metadata files for the idr0061 submission
Python scripts for the SearchFirst option in Wako Software Suite
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
Interactive visualisation of quantitative concepts in high-content screening
Scripts for use with BIOMERO
A tool for automatic neurite outgrowth and cell viability estimation using deep learning and graph theory.
Microsnoop: A generalist tool for microscopy image representation
A flexible Julia toolkit for high-dimensional cellular profiles
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
Self-Supervised Vision Transformers for multiplexed imaging datasets
Generative Adversarial Network for single image super-resolution in high content screening microscopy images
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