📊 A universal enrichment tool for interpreting omics data

Access to Biological Web Services from Python.

Analyzing and visualizing KEGG information using the grammar of graphics

Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

KEGG Module Evaluation Tool

An interactive radial tree for functional hierarchies and omics data visualization

A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)

A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.

Build Annotation package by using information from KEGG, NCBI, Ensembl

A comprehensive gene set function enrichment tool for multiple species.

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

Library for KEGG pathway enrichment analysis

A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

Python wrapper for ipath3