Fast and accurate de novo assembler for long reads
-
Updated
May 10, 2024 - C
#
long-reads
Here are 84 public repositories matching this topic...
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
deep-learning nanopore genomics computational-biology pacbio variant-calling illumina long-reads variant-detection ont-data ont-models
-
Updated
Dec 12, 2024 - Python
PEPPER-Margin-DeepVariant
nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing
-
Updated
Jan 12, 2024 - Python
Reference-guided transcript discovery and quantification for long read RNA-Seq data
rna-seq r nanopore bioconductor transcriptomics rna-seq-analysis transcript-quantification bambu long-reads nanopore-sequencing transcript-reconstruction
-
Updated
Dec 23, 2024 - R
Long read production pipelines
-
Updated
Dec 20, 2024 - Jupyter Notebook
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
workflow bioinformatics nanopore pipeline nextflow shotgun pathogen metagenomics classification profiling microbiome illumina long-reads taxonomic-classification nf-core taxonomic-profiling
-
Updated
Dec 20, 2024 - Nextflow
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
-
Updated
Dec 10, 2024 - C
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
-
Updated
Oct 25, 2021 - Python
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
-
Updated
Nov 29, 2024 - R
Tandem repeat expansion detection or genotyping from long-read alignments
-
Updated
Nov 25, 2024 - Python
-
Updated
May 6, 2024 - Python
ClairS - a deep-learning method for long-read somatic small variant calling
bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads
-
Updated
Dec 1, 2024 - Python
A fast tool for hybrid genome assembly of long and short reads
-
Updated
Apr 22, 2020 - C++
Long-reads Gap-free Chromosome-scale Assembler
-
Updated
Mar 21, 2023 - Python
Yet Another Chimeric Read Detector
-
Updated
Nov 7, 2024 - Rust
⛓ Long Interval Nucleotide K-mer Scaffolder
bloom-filter scaffold long-reads draft-assembly extract-kmer-pairs genome-assemblies scaffold-layout
-
Updated
Dec 13, 2023 - Perl
Graph-based assembly phasing
-
Updated
Nov 1, 2024 - Python
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
bioinformatics genome taxonomy metagenomics classification fasta fastq metagenomes dna-sequences short-read-mapper read-mapping metagenomic-analysis metagenomic-classification genomic-data-analysis bioinformatics-algorithms long-reads metagenomic-data refseq ncbi-refseq bioinformatics-tool
-
Updated
Oct 1, 2024 - C++
Scalable long read self-correction and assembly polishing with multiple sequence alignment
assembly ngs consensus correction long self msa reads contigs long-reads multiple-sequence-alignment polishing self-correction
-
Updated
Feb 6, 2024 - C++
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics deep-learning nanopore genomics somatic-variants variants pacbio variant-calling somatic-mutations illumina snvs long-reads ont long-read-sequencing tumors tumor-only
-
Updated
Dec 2, 2024 - Python
Improve this page
Add a description, image, and links to the long-reads topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the long-reads topic, visit your repo's landing page and select "manage topics."