Structural variation caller using third generation sequencing
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Dec 16, 2024 - Python
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nanopore
Here are 245 public repositories matching this topic...
A PyTorch Basecaller for Oxford Nanopore Reads
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Jul 25, 2024 - Python
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
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Oct 18, 2024 - Python
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
deep-learning nanopore genomics computational-biology pacbio variant-calling illumina long-reads variant-detection ont-data ont-models
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Dec 12, 2024 - Python
PEPPER-Margin-DeepVariant
nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing
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Jan 12, 2024 - Python
A curated list of awesome nanopore analysis tools.
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Aug 6, 2024
Assembly and binning of metagenomes
workflow bioinformatics nanopore pipeline annotation nextflow assembly metagenomics binning metagenomes nanopore-sequencing nf-core long-read-sequencing
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Dec 20, 2024 - Nextflow
Reference-guided transcript discovery and quantification for long read RNA-Seq data
rna-seq r nanopore bioconductor transcriptomics rna-seq-analysis transcript-quantification bambu long-reads nanopore-sequencing transcript-reconstruction
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Dec 23, 2024 - R
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
gene compression nanopore sam pacbio compress bam fastq genomic-data-compression compression-rate fastq-compression gtx
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Apr 18, 2022
Methylation/modified base calling separated from basecalling.
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Sep 17, 2024 - Python
A bioinformatics tool for working with modified bases
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Dec 21, 2024 - Rust
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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Dec 23, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
python machine-learning rna-seq nanopore genomics rna transcriptomics modification nanopore-sequencing rna-modifications
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Nov 7, 2024 - Python
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