Personal Cancer Genome Reporter (PCGR)

Patient-Specific Modeling in Python

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

preon (PREcision Oncology Normalization) is a fuzzy search tool for medical entities.

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

Cancer prognosis with shallow tumor RNA sequencing