FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.
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Dec 27, 2023 - Python
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protein-ligand
Here are 10 public repositories matching this topic...
Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)
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Aug 4, 2023 - Jupyter Notebook
Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning
variational-autoencoder geometric-deep-learning multimodal-deep-learning graph-neural-networks protein-ligand generative-ai
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May 17, 2024 - Python
drugdesign.org source of truth
bioinformatics cheminformatics molecular-dynamics drug-discovery drugs drug-design qsar molecular-modeling molecular-similarity molecular-docking library-design protein-ligand database-searching structure-activity-relationships
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Feb 18, 2024
SAnDReS (Statistical Analysis of Docking Results and Scoring functions) is a free and open-source computational environment for the development of machine-learning models for the prediction of ligand-binding affinity. We developed SAnDReS using Python programming language, and SciPy, NumPy, scikit-learn, and Matplotlib libraries as a computational
python machine-learning scikit-learn docking i protein-drug-interactions protein-ligand sandres scoring-function-space
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Nov 10, 2024 - Python
Open-sourced docking for small molecule to protein target. It prioritizes enhanced user-friendliness and accessibility.
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Jul 28, 2024 - Jupyter Notebook
R shiny app to analyse microscale thermophoresis (MST) data
data-analysis protein-ligand-interactions protein-ligand-binding-affinity protein-ligand microscale-thermophoresis
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Nov 26, 2024 - R
Two R shiny apps developed for analyzing differential scanning fluorimetry (DSF) data. One for binding, and one for stability
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Nov 26, 2024 - R
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Mar 1, 2022 - Jupyter Notebook
Performs large-scale ligand identification, curation and extraction from human structures in the Protein Data Bank.
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Mar 26, 2024 - Python
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