Official git repository for Biopython (originally converted from CVS)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Versatile open-source tool for microbiome analysis
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Sequence-to-graph mapper and graph generator
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Align proteins to genomes with splicing and frameshift
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
A fast multiple sequence alignment program.
Neural Networks for Protein Sequence Alignment
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Comparative Genomics Toolkit 3
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Genome wide orthology inference and dNdS estimation
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