BioVirtuoso

Bio-virtuoso

Participants: Hiro Mishima, Jeremy Nguyen Xuan, Tudor Grosa

• the BioVirtuoso Docker data containers (https://github.com/misshie/bio-virtuoso )
• purpose: Developing Docker containers for easy deploymet of the Virtuoso database engine with preloaded multiple RDF biodatabases.
• Monarch Initiative offeres good RDFized databases at http://data.monarchinitiative.org/ttl/ (Thanks, Jeremy)
• Related projects
  • SciGraph at https://github.com/SciGraph/SciGraph
  • Blazegraph at https://blog.blazegraph.com/
• Containers are all updated using Momarch Initiative's TTLs. Documents are also updated.
• A SPARQL endpoint using bio-virtuoso is at http://www6069ui.sakura.ne.jp:8890/sparql . To test, please submit "SELECT DISTINCT ?g WHERE { GRAPH ?g {?s ?p ?o .}}"
• try to make sample web-apps using Bio-virtuoso.
  • A tiny sample using BioVirtuoso + TogoStanza2 (JS based) is at http://www6069ui.sakura.ne.jp:8080/stanza/bio-virtuoso/help.html