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Omics
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AtMet Arabidopsis metabolome data visualization on pathway (A Fukushima, K Nishida, T Tokimatsu; interested: Mas Kot, E. Bolton)
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Metabolite curation in AtMet metabolome data set
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Flavonoids, glucosinolate etc.
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Name, IDs (PubChem etc.)
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Serialization of metabolome profiles
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Make secondary metabolite pathway maps (Wikipathway format)
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Conversion from Bioconductor sqlite db to RDF with D2RQ
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Glycomics (Thomas, Aoki, Shinmachi, Matsubara, Issaku, E. Bolton, Mas Kot, Okuda, S-Kawashima)
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Glycan ontology
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Cooperation (GlyTouCan, MonosaccharideDB, PubChem, PDBj)
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Data format converter
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Monosaccharide Ontology
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Linkage representation (with FALDO)
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Definition of monosaccharide
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Representation of 3D structures in RDF (not limited to glycans)
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Refinement of RDF (GlycoEpitope, GlyTouCan etc.)
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Proteome Database, jPOST (S Kawano, S Okuda, Y Moriya, AC Yoshizawa, T Tabata, [S Kawashima (interested)])
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Metadata and Ontology
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PIERO reaction ontology (Mas Kot, Y Moriya, T Tokimatsu, I Yamada, A Fukushima, K Nishida)
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Data curation (adding/correcting more terminology)
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RDF standardization (following the guidelines)
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R package distribution (for the benefit to the potential users)