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KEGG OC RDF Application
acyshzw edited this page Sep 18, 2015
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Akiyasu C. Yoshizawa, Yuki Moriya, Shin Kawano
- Annotation tool is needed mainly for proteomics biologist.
- Some proteomics research group tried to build a simple annotation tool for rat proteins; this tool shows annotations of human/mouse ortholog of input rat protein.
- We tried to develop a general-purpose tool being same in the concept (especially for Eukaryotic proteins), with utilizing KEGG OC (an ortholog cluster database) and RDF.
- KEGG OC (KEGG Ortholog Cluster) is a database of ortholog clusters (OCs) based on the whole genome comparison.
- converted KEGG OC to RDF.
- set up the endpoint for test. http://jpost.org/keggoc/ (This URL will be hidden later.)
- tried the sample sparql query for annotation tool (e.g. show GO terms for orthologs of an uniprot id).
- schema