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20 Open 271 Closed
20 Open 271 Closed
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Issues list

Question regarding ligand prioritization
#312 opened Dec 18, 2024 by kaizen89
Question Regarding Estimating Ligand-Target Matrix Using Custom GR Network
#311 opened Dec 14, 2024 by peipp410
"Error: None of the features provided found in this assay" when running nichenet_seuratobj_aggregate
#310 opened Nov 26, 2024 by kangjiajinlong
Persistent Error in get_ligand_signaling_path Function - Ligands Not Found in ligand_tf_matrix
#308 opened Oct 25, 2024 by dyedye97
2
Cannot find the following identities in the object: Other
#305 opened Sep 27, 2024 by arunchakra
DiffNicheNet for the same cell type in different time points?
#304 opened Sep 27, 2024 by arunchakra
assign_ligands_to_celltype erroe message bug Something isn't working
#303 opened Sep 13, 2024 by wang2034
@csangara
1
Parallelization error when optimizing parameters for NicheNet
#292 opened Aug 6, 2024 by tkapello
4
Error in Idents<-: ! 'value' must be a factor or vector
#284 opened Jul 13, 2024 by XIANZHE-LI
4
generate_prioritization_tables warnings and documentation enhancement New feature or request
#281 opened May 30, 2024 by csangara
2 tasks
Warning message in predict_ligand_activities enhancement New feature or request
#280 opened May 30, 2024 by csangara
@Eisuan
How to choose the best ligand to continue analysis with the potential ligand?
#266 opened May 7, 2024 by pariaaliour
Identifying bonafide ligand-receptor pairs in the updated ligand-receptor database (V2)
#256 opened Mar 4, 2024 by alecorr
Error while plotting a ligand-receptor interaction network
#252 opened Feb 10, 2024 by Saumya513
Error in "evaluate_target_prediction(setting, ligand_target_matrix, ligands_position) : all genes have same response"
#245 opened Jan 9, 2024 by zcaiwei
make_ligand_activity_target_exprs_plot inconsistent ordering cell types
#142 opened May 11, 2022 by browaeysrobin
Seurat Wrapper + Circos visualization
#127 opened Feb 17, 2022 by chrismahony
1
Conda package enhancement New feature or request
#95 opened Jul 23, 2021 by Zethson
8
nichenet through seurat-cell type specific ligand/receptor scores enhancement New feature or request
#77 opened Mar 26, 2021 by annamath
4
Making a ligand-receptor-target circos plot enhancement New feature or request
#20 opened Apr 8, 2020 by abberclark
2
ProTip! Adding no:label will show everything without a label.