Aggregate results from bioinformatics analyses across many samples into a single report.

Structural variation caller using third generation sequencing

A flexible pipeline for complete analysis of bacterial genomes

genes and genomes at your fingertips

Toolset for SV simulation, comparison and filtering

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

🚀 seqfu - Sequece Fastx Utilities

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

🦠📇 Microbial genomes-to-report pipeline

Chanjo provides a better way to analyze coverage data in clinical sequencing.

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support

Recommendations to contenarized your bioinformatics software

ProtGraph - A Graph-Generator for Proteins

Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)

BioContainers Documentation.

A quick overview of how to use Bioconda, and create recipes