paml
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Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
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Mar 18, 2019 - Python
Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs
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Feb 28, 2023 - Python
A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.
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Dec 12, 2024 - Python
Clustering methods implementations in C++: Lloyd, K-Means, K-Means++, PAM
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Sep 23, 2023 - C++
Simulates the evolution of intein invaded extein sequences based on simulated phylogenies and using a Monte-Carlo like process.
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Sep 12, 2023 - Perl
It is a powerful tool for aligning nucleotide sequences based on protein alignments, translating nucleotide sequences to protein, and generating phylogenetic trees using Biopython.
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Aug 4, 2024 - Python
A python script that takes alignment file and builds a phylogeny tree.
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Oct 8, 2018 - Python
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