Standardized data set for machine learning of protein structure
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Nov 18, 2020 - Python
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protein-sequence
Here are 50 public repositories matching this topic...
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
protein-structure protein representation-learning protein-sequence predicted-structures pretraining structure-aware protein-language-model alphafold2 foldseek structural-alphbet protein-llm
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Dec 11, 2024 - Python
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
deep-learning protein-structure pytorch recurrent-neural-networks language-model protein-sequence protein-embedding protein-modeling protein-representation-learning
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Jun 16, 2021 - Python
ProtFlash: A lightweight protein language model
bioinformatics pretrained-models protein-sequence protein-representation-learning protein-embeddings protein-language-model
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Mar 2, 2024 - Python
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
bioinformatics structural-biology protein-structure protein protein-design protein-sequence graph-neural-networks
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Mar 24, 2021 - Jupyter Notebook
De novo protein structure prediction using iteratively predicted structural constraints
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Jan 30, 2022 - C
A Text-guided Protein Design Framework, Nat Mach Intell 2025
protein-structure protein drug-design protein-design protein-sequence ai4science llm foundation-model large-language-model protein-editing
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Jul 20, 2024 - Python
A Python 3 version of the protein descriptor package propy
python bioinformatics python3 protein-sequence dipeptide-composition-descriptors protein-descriptor geary-autocorrelation-descriptors
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Feb 8, 2023 - Python
Guided Conditional Wasserstein GAN for De Novo Protein Design
protein-structure protein generative-model generative-adversarial-networks protein-design protein-sequence
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Feb 23, 2021 - Roff
MOLeculAR structure annoTator
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Oct 2, 2024 - JavaScript
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
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Oct 7, 2024 - Python
Deep learning based alignment-free method for protein family modeling and prediction
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Jul 31, 2018 - Python
Python Toolbox For Rosetta Silent Files Processing
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May 23, 2019 - Python
Web application for protein-ligand binding sites analysis and visualization
visualization web pdb protein-structure web-application conservation protein webapp analyses protein-ligand-interactions ligand protein-homology protein-sequence conservation-scores
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Jan 9, 2023 - JavaScript
Simple visualisation tool for sequences' similarity in bioinformatics
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Apr 12, 2018 - Python
A curated list of awesome protein design research, software and resources.
bioinformatics structural-biology protein-structure molecular-biology protein-design protein-protein-interaction protein-sequence structural-bioinformatics protein-engineering protein-folding protein-structure-prediction bioinformatics-tool protein-function alphafold alphafold2 alphafold-multimer
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May 10, 2022
Python Toolbox For Rosetta Silent Files Processing
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Aug 2, 2021 - Python
A curated list of awesome Molecular Modeling And Drug Discovery 🔥
bioinformatics structural-biology protein-structure drug-discovery molecular-evolution protein-sequence protein-engineering molecular-modeling molecular-docking alphafold molecular-generation alphafold2
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Jul 21, 2022
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
smith-waterman needleman-wunsch needle water global-alignment sequence-alignment emboss protein-sequence pairwise-alignment local-alignment nucleotide-sequence
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Oct 30, 2024 - Python
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
visualization viewer javascript-library interactive-visualizations amino-acid-sequence protein-sequence mutation-analysis
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May 5, 2024 - HTML
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