A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool

Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif

This is one of my first python scripts for a simple web-based tool that will generate basic biological data from the query DNA sequence.

The active development version of the degenerate bases algorithm.

Random DNA 🧬 nucleotide generator and reverse compliment finder 🔬

Swift package for bioinformatics

Protein to RNA reverse translation

DNA or RNA complementary, reverse and reverse complementary sequences generator

Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)

API repo: https://github.com/shamseen/pngcat-api

Needleman–Wunsch algorithm implementation in Go.

Basically BLAST, but written in PostgreSQL😉

BIAP - A website that serves as a tool to analyze biological data (nucleotide and aminoacid sequences) and provide biology-related information in one place.

Filter fasta sequences by length

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

Analysis of FASTA ,Protein,DNA sequence.

Simple wrapper for std::basic_string<int8_t>.

Needleman–Wunsch algorithm implementation in Lua.

a Python program to calculate GC content from fasta file